Scaffold Ga0114973_10072745

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114973_10072745

Scaffold Ga0114973_10072745

Overview

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10072745 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1984
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F030333	Metagenome	185	Y
F034448	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100727454	F030333	AGGTGG	VAIDRNPKLVIPVKTYSHYTECEPWCQANVGAWNVTWWKDFPDIAMNIALGEGPQPDCYWFEREQDALMFRLRFV*
Ga0114973_100727456	F034448	N/A	MYVNNYTLPRPEESVLDQCQLVVVNDPAFRMWAMKKYCVENKLSLVWSELVDTSDVSAFFDEAAAFYFIDPADATLFRLKFK*
Ga0114973_100727457	F015302	N/A	MMSQDEYYSSTAARLDTIIGGDTSHFLRLQRVKNEYDALARDVPVGQGFLTFYDYVKEYYGVKLVYDGDDLKLEYAVIDEKKYTMFLLKFGR*

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