Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10005972 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10005972 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8229
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8229

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (68.75%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000506	Metagenome / Metatranscriptome	1070	Y
F000763	Metagenome / Metatranscriptome	901	Y
F002135	Metagenome / Metatranscriptome	590	Y
F004430	Metagenome / Metatranscriptome	438	Y
F007522	Metagenome / Metatranscriptome	349	Y
F015995	Metagenome	250	Y
F019825	Metagenome / Metatranscriptome	227	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100059721	F019825	AGGGGG	MGYVEILRGGPYLERMENDQVKFVPSTDLCIACNDDRLIH
Ga0114973_1000597210	F004430	AGG	MAKGFEVLEMLIPTGGWVMSGDEYEGIQFLECEPITKKQFEDGFAKYDAWKAKQETSKANAKSELLDRLGLTADELQVLLG*
Ga0114973_1000597214	F015995	AGGAG	MPVEVVGVKDVLKGLEFIDEDMRQRIRTAIDPLMRGVAFKAKGFVKANGDVLSGWAKASGNPGTFPKYDSNVVRAGIGYNPGENKTFRNGFKVSNYVYNASRPGAIYEVAGRLNPQGRAPFQMTPSQGASGTYTKRSARSKAFQEYKSNNPFASQQFVAALDPVTSQPKIKDIRSQGRKTKGRLIYKAWSEDSPKVYDAILQAINATAIDFNKKTEIKKAA*
Ga0114973_1000597215	F000506	AGGAG	MAKLKITRANGEVTEHRITPGIEYNFELKYGSGISKVLREHERQTEIFWLAYECLRKAGAQIPIWGSEFIDTLETVEVLDEEKK*
Ga0114973_100059724	F007522	AGG	MDLKEAGLLWVAIMVAIIWAYGMYENAKQTHYWRGRKDGWDMHRRMIDNKTNADNN*
Ga0114973_100059726	F002135	N/A	MANTRKRKKINRRVVRKSPDPLSKLDMFYIAKHEMYKAARKAGFSEPLALALMDSPSSMPDWVVGEDGIIPSIPTPEEDED*
Ga0114973_100059728	F000763	AGGAGG	MNMKNPYFLTAGAFLSAWAASNFAADYRSILWAILAGVFGYATPKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10005972

Overview

Ecosystem & Geography

Associated Families

Sequences