Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10003984 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10003984 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10327
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10327

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F031407	Metagenome / Metatranscriptome	182	N
F034112	Metagenome / Metatranscriptome	175	N
F060725	Metagenome	132	N
F064518	Metagenome	128	N
F090088	Metagenome / Metatranscriptome	108	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000398410	F034112	AGGAG	MVIFNIGNKQNKYNYPETASDITLEQYIYFAKFLLPQHPKVEIEAIQYMNDRDAVYQKILPYAKKLKVKVTGFEQLYVILKLEYTLEQEEVKDNVRRFLPPLMIQWRTNDEQLNQRLEIMDEVWEANVRYPYMAKVVNYFTGIPLDACFGKVADSLELKYLFYIYTKIMNAINTPTETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPEGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSEKYMLDLQTSMLERAMENLN*
Ga0114973_1000398411	F031407	N/A	MTDKEKALIIIDLIEKITQEIIDKPLQRKRLLQMRGHLEKAVKLTGNGIKREWSRPPSLPLVSHDKAEPVPFKQSTTETNGDLLADNIPVVTKKARRK*
Ga0114973_100039842	F090088	AGG	MEDKEALGKKVFLEFYSTFILDDEIEETGRVFYLAQKASMVHLNLIRGILQNDEYIINMAYLKDVINKIKI*
Ga0114973_100039843	F060725	N/A	MIKLFIGGQEVDLNQNEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFLASNFKISLIGNNADWFADVGNTLVRDLGWSTIEVSETTVKANYNPVTAEYCFILMKWKAWENETYILYNELTPAIFIWQILEKAFKDKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNLRASNPSPSTFTKSAGENGTVNITFTDETTSPNFDTGGNYTGGVYTVPINALYELIAELNVTLTATIGDINQFAELILFFEVNGNNVSTYDLTNETSLNDSISLEFLGDLVIDDVVKLRLRYENVSFNLSIAGSLSVVAEKEGLETGETVNLQYIIPISWYVRDIISDLTTIFNLAWETDVLNRQVYAYPKDDYTIRYRANSTGAASITTFDGFFKGSNKYDLNIRDVEGSDFQVFDGYKSTQVLAYATDDDTTNKEEERRGVNIYSGGYNFPTDRFDNGIEFIYTNFFAKAIHINDVAITTGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGKIRLFDETTSAASAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYSTFVKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNTNDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNILVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIISGSTIEINVNTHYDGANYEVVINGVTKG*
Ga0114973_100039849	F064518	GAG	LFNLTGFTPMESAEKAKLYQVFQYLASKAAEDKMVEDLSKQKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10003984

Overview

Ecosystem & Geography

Associated Families

Sequences