Basic Information | |
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Taxon OID | 3300009068 Open in IMG/M |
Scaffold ID | Ga0114973_10000323 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 35811 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (85.11%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004668 | Metagenome / Metatranscriptome | 428 | Y |
F026545 | Metagenome | 197 | N |
F038213 | Metagenome | 166 | Y |
F061658 | Metagenome | 131 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114973_1000032325 | F004668 | AGGAGG | VSAADHIDQIHAQGWTRVDTAPDEWVAVVPNDDNSAFGGTLWKRGSDGADHAEGVTAGHPVSAALDFESAGRALAVLIKSENS* |
Ga0114973_1000032326 | F061658 | N/A | MAVITEPAYLDEQTGMLTEIVRDAETGEIIGKNERMPEEVPE* |
Ga0114973_1000032330 | F038213 | GGAG | MTESQARQIISRLDAQSAKIDKLQSQIDEMRGGLAVLKGLGGLLGVGGLGALLAWLQGQGK* |
Ga0114973_100003234 | F026545 | GGA | MAGVKAKREGAVKPPVWTVTDCSACGKVIDYTDAKRSVFPGVRVLVINFNGAKGGRRYTWKHKACA* |
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