NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100220004

Scaffold Ga0066710_100220004


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100220004 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2722
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000217Metagenome / Metatranscriptome1557Y
F000440Metagenome / Metatranscriptome1137Y
F001138Metagenome / Metatranscriptome767Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1002200042F000217AGGAGMKSKILTFASDGDTTLLEYDPATADMEEVNKLIAEYEAKTGAQPFDMATGERLEKVTREQNEVLMVHPIAGG
Ga0066710_1002200043F001138N/AMIALLTLIVWRMVFAGLWRRPFVRENAASQPQNNNFLRQGRNILERTGTAVIAGDRFERSSDGGDPLDRRDRAETYLRRIVALTGATQMASSYVLDVGTTRFHVRDRYVGRLRDLTDPKSAYEETCFYPVHKGMPKAEEIATALLQLTNNPALFDKWAFQNGLAFKADGQVFTRAQ
Ga0066710_1002200044F000440AGGVRSDLVAMRKRTKCTPAQRATKYLKRIAALTGAKQVCGERYRLTAGRMHFLVDSKFVRLISPRSESTCFSVAADPDMPSAEVVASALLQLKNNPRLFEKWREWRAHTFKANGEMFRDKYQLTRDET
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