NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100160349

Scaffold Ga0066710_100160349


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100160349 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3145
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y
F001935Metagenome / Metatranscriptome615Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_1001603491F001935GGAGVYLRHLSSLQFLTYCSFFAVVIAAIFRFMPGKAPPLRTRPYPDDELAAHDRKLAKYFVAGGAFLVLGSVHMVVKNLPWVAQYLARTGYAGHLVRDLSNTHVMIVGGGTLLATGLCWYV
Ga0066710_1001603492F000280AGAAGGMARRPARPLFGYRDVGEDVRHSRGAMSRAWIVLAALMLFYLGWTLFIYFLEPGLR
Ga0066710_1001603493F001079AGAAGMAAAAPYVSYSSATMAFVPAESWPIVYSSMQALKGHVQEYPGCQRLEAFVQAEPDGAVRVHCYTTWDTSEQLEAFLERGYTFERMLRDVAELGIERNYVMEKVF
Ga0066710_1001603494F000805AGGAGMESGESPQHATAYYHYLQAHQETLHVPATWHVDWLSLAWLWGFAIILGLLILAWLWQYRSTRQKAGIYPIDNFAGYTTELAGPATFFFLALTVLLTAFAVAIIVGHLVWGQKF
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