NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066710_100039848

Scaffold Ga0066710_100039848


Overview

Basic Information
Taxon OID3300009012 Open in IMG/M
Scaffold IDGa0066710_100039848 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5650
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034863Metagenome / Metatranscriptome173Y
F071041Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0066710_10003984815F071041N/AVNVTLQLDVVAFTLAKVQGDPVNVPVAVPPLVNATVPRGADAVPATEVSFTNPVQLID
Ga0066710_1000398482F034863N/AMTVPAPVGVKVTLQLEVVAFTLANVQGEPVNEPVAVPPFVSATVPSGADAVPAAEVSLTKPVQVMTCATTTVEGAHVTAVEVVLRLTVTVFPAVGPLPL
Ga0066710_1000398483F071041AGGMIVPALVGLKVTLQLDVVTLTLAKVQGDPVNEPVAVPPLVNATVPSGADAVPAAEVSLTNPAQVTT
Ga0066710_1000398485F034863N/AVPLAITVPAPVGVKVTLQLEVVALTVAKVQGDPVNDPVAVPPFVNATVPPGAEVVPEAVSLMKPVQVVAWATTIAAGEHVTAVEVDLPPTVTVLLLLGPLPL
Ga0066710_1000398487F034863N/AMTVPAFVGLKVTLQLEVVALTLANVQGDPVKDPAAVPPLVNATVPRGAEAVPATEVSFTNPVQVMTCETTTVAGVHETAVDVVLRLTVTVLPAVGPLPR
Ga0066710_1000398488F071041N/AMIVPDAVGLNVTLQLDVVALTVANVQGDPVNVPVAVPPFVNATVPRGADAVPATEVSFTNPVHVTT
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