| Basic Information | |
|---|---|
| Taxon OID | 3300008962 Open in IMG/M |
| Scaffold ID | Ga0104242_1020453 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5 |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Institute of Technology |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1147 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Lanier in Georgia, USA | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000473 | Metagenome / Metatranscriptome | 1097 | Y |
| F000671 | Metagenome / Metatranscriptome | 945 | Y |
| F073544 | Metagenome / Metatranscriptome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0104242_10204533 | F000473 | AGG | MEFINKDKDHFKHGINLWNGEPNKPVFYTKEMSLKIRDIKKPVNDLMLDVVQYPEFLAVRLYEDNFVQYEGIKKEQVIDYVGKVKKLIESYGVRCELEGVPSARILRNN* |
| Ga0104242_10204534 | F073544 | AGG | VREYYETINIVFVHELRLWGTCESLGLYASKIKYQKDGIEYEETLDNEEFTVMEEIVIEHLEEEN* |
| Ga0104242_10204535 | F000671 | GAGG | MEKILCYCCNKTKNKLNLKKSVLIPINLFMCETCISSKFEPRWVIILAGRQLGSDSVKEFIIKKRYCGADISASELLV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |