NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115657_1228766

Scaffold Ga0115657_1228766


Overview

Basic Information
Taxon OID3300008735 Open in IMG/M
Scaffold IDGa0115657_1228766 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)938
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080145Metagenome115N
F090854Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0115657_12287661F080145N/ANIGLELGQYQASDVLAPGSVAPSTLRKESFKDSDGKSEVILPADEAYAASRQAMHKTGKNAENVHNSGYNYGKNVFGSIKMVYYDNYRRDKLGLYVLKLSRYSHLLIRFPGAKKIIEKIIDEFPDNAFNRMVWKVTESFLNIRVHADVPFSFFMKYFLFHRNKQIR*
Ga0115657_12287662F090854AGGGGGMDPHKGSKLQSIITFFLNILLYIVYGFLKILYLFKKEEEFVEPSHLIPAPDKPISSFKLAQALNPKTDPLKLTRFSQDEDSFVRKAVCRNPSLPKTELEKLTKDTDKDVANEALKMLKNPDIKIDEKFPTQHGG*
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