NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114880_1041319

Scaffold Ga0114880_1041319


Overview

Basic Information
Taxon OID3300008450 Open in IMG/M
Scaffold IDGa0114880_1041319 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2000
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003841Metagenome466Y
F038219Metagenome166Y
F102844Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0114880_10413193F003841GAGMIDYALILATNYPGTEWALDGNNYETLQWFSNTPKPTQAELDAAWPQVEYKNACTQVETNRRLAYEAKSDGLFFEWQRGDNTEAAWREAVAKVKAANPYPPAP*
Ga0114880_10413194F038219N/AMNKNAQLQTADQTLKGAVIALGSYVAHKYNVDPQIIALSIPVVSAVMALISTRLGNPNTACLFVEKTDENK*
Ga0114880_10413195F102844N/AMPVYKVPGYSVVSEPLAGTIEWVKQAELTSGGAVWNNGHYAMRNIRGSDTGGKRGIISNHARGVAMDLSYRRIEARKLGVPNARIKALTWLNTVLDNWELLGVQCVLDYFPEPHGRGWRVDRVDALPPKAHNVQAWVKYMKPTITGAPGGDWFHIEIRLGMANNPDRVRAAFHAAFGKSTTTEHVPTTVEPTTTKGGKRRARPNGNQPT
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