| Basic Information | |
|---|---|
| Taxon OID | 3300008450 Open in IMG/M |
| Scaffold ID | Ga0114880_1021578 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2991 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Western Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014089 | Metagenome / Metatranscriptome | 266 | Y |
| F033645 | Metagenome / Metatranscriptome | 177 | Y |
| F037494 | Metagenome | 168 | N |
| F105053 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114880_10215783 | F105053 | GGAG | MNELSIIVMMLIAGILWAAMSYSVGYKEGQREGFKRGRAVSRHASREVR* |
| Ga0114880_10215784 | F033645 | GGA | MSFLDNYEDVAARIARLWLTHPTARVQTNIVDFNAEKGYVLIQAQIFREYEDVYPSATDYAFGNVATYNVNMKKFFVEDTVTSAIGRAIGLLLGADKRPTRQDMEKVETVSAKVANSTADDYDPWTKKFGDVPSYKTAEEAEQSGIPSLGSSMDEIAKQLGGELLPEAPQCSHGHRIFKTGEAKTGKAWGGWFCVEKTKATQCSPLWYVLTSSGKWSPQV* |
| Ga0114880_10215786 | F014089 | N/A | MSDLIEIIYPQSMTAKLLQNGEVIAEYKVEQCDSCAKVKKLDAFGYTKGQGGEKLTWLCGDCR* |
| Ga0114880_10215787 | F037494 | N/A | MKVKPTIEDKVLAHTVALERIAQIQGHPDASSRYDRQLGFHDYVAQVAESIVAEILVARYLGYVDFDPRSSQFKKTADVGSFIEVKWTRYESGQLIIYENDRQSDVAVLVVGTSPNYRLAGWIPVAMAKRPKYKNSKQPTWWVDQKNLQPIENLKGSNYGQAAL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |