NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114876_1021865

Scaffold Ga0114876_1021865


Overview

Basic Information
Taxon OID3300008448 Open in IMG/M
Scaffold IDGa0114876_1021865 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3298
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F037113Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0114876_102186511F001477AGGAGGMSNIYTIHPKKSELILFYEVTTPDGENEWGGASCIEAMQWLSLAPTGSRLLISAWDSDEEDAHLVGQTIDVTDLIQQAREIGR*
Ga0114876_102186513F003863GGAGGMESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGIHTRANAVPEV
Ga0114876_10218656F003212N/AMKDKWLVTLEIDTYDGPDPRYWDWSKLLTGDDVKVIESQFKGRVLPANEGESNE*
Ga0114876_10218657F037113GGAGMSKWTVWVGGSEVNWKHYTHKIDAERIAEFWREVKGYDDVIVEEVA*
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