NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114363_1001460

Scaffold Ga0114363_1001460


Overview

Basic Information
Taxon OID3300008266 Open in IMG/M
Scaffold IDGa0114363_1001460 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13920
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F078706Metagenome116N
F086839Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0114363_10014603F000934GAGMSLNTILQVSESIAINDQKLVGQVLSRNQRISTSELLTVQPFEFTMNPMKYLLYSQNRNLLSSLRVADKATEQYLNFTNIGWLNYVAYQGDMTSGQIAACQWQTSSANKTLVLGSLPSISSTAYIVKKGDFCQVGRYAYIATADVQRGASSTVNIPVHRNLIDTLVSAVGAVIGQYGTTISLGGGTYTGATFPVILREYPTYTLVPMTNDSFISWNGPFVAIEDVL*
Ga0114363_10014606F078706AGGAMSKLGSALGKKYEENRLSVLTRSFELGDHTFKVRVPSVSEIEAIYNYFKTPNEEKVELEYQKMLKEFDGLKEKEGVEIKDNDMVIDGRSMRETAKNKHILQHRIVEYIKFLIPEAGSLEDINYEDVEAEFPLSVQMTLVEKINEVISPEYKDIKSK*
Ga0114363_10014607F086839AGGMSVKFAVNGLKETLDAFKEFQEQFGDKDAKSKVLIPAVREAIKPVLAMAKALSPKDTGALDRSLYITARRPTRKDMKSRYVTPKDSVISLVSSRPIPKKVKQQFQAEYGNLKGKEYKKAKRKFYTEQGVMFDARAIANEFGTANMSAKPFMRISLESQAQAVATRLGLIIKQKMDSYKAKNLTT*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.