NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114336_1260035

Scaffold Ga0114336_1260035


Overview

Basic Information
Taxon OID3300008261 Open in IMG/M
Scaffold IDGa0114336_1260035 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)685
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005879Metagenome / Metatranscriptome387Y
F043933Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0114336_12600351F043933N/AMDIREQCRERATKFAIEYGFTNVSEHILDVMVSIMCTRDKSSYAGGGFVEAVVA
Ga0114336_12600352F005879N/AMFNEEVFWKDGFEGECTGGIFTRAVELKKFLELVEANESGNGGEVVGLRFSDNNLEIIIKPKK*

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