NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114354_1023449

Scaffold Ga0114354_1023449


Overview

Basic Information
Taxon OID3300008119 Open in IMG/M
Scaffold IDGa0114354_1023449 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3302
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)7.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F006264Metagenome / Metatranscriptome377Y
F025723Metagenome / Metatranscriptome200Y
F098944Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0114354_10234491F025723N/ANEEISNAKFHHVDLSLSPRLRVRLINEMIDQHILWAYTWGIPVVCSTSIRAEHDGFMKIHKKRGFTVNGSYAWLRTEKGMECLKK*
Ga0114354_10234492F098944AGGMFEEIRPEGSTVSSEEIKQRARDYAKAKRAQKKAMKLATGQIEPKAIETVPVVDEFDMTAFVPRSQVKAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALKDFMESLRKV*
Ga0114354_10234496F001059AGGAMATYDIDSLKADLPTAKELAQFVYDKVNVSLDLVGKNKEEQYTVAKNALEGKKIPSEYLTEENPYVDKKDQIPCDPVRKLPKRDIDLPDEDSLVHFFGATNMPHPLDPQSDKKVHINFKKYNNGVLTYQIMGPLEQIPVGTKVNKYGQTTPEKYTWLDPRTAELVMRRADGTLTEKGRGLYTFLVGEKGGGVWSLIDRDIVSISAKNIADPWA*
Ga0114354_10234497F006264N/AMEDPSKIFQSKLSSQAEVCARKALEWLQKDLQGPQKLQPDEVYYLSYAAQVLLNIRDNYGKK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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