| Basic Information | |
|---|---|
| Taxon OID | 3300008119 Open in IMG/M |
| Scaffold ID | Ga0114354_1007733 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9432 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (19.05%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 7.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F002259 | Metagenome / Metatranscriptome | 577 | Y |
| F006697 | Metagenome / Metatranscriptome | 366 | Y |
| F010159 | Metagenome / Metatranscriptome | 307 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114354_100773314 | F010159 | N/A | MSWQIPTLIEADIKSGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGGISVTGSDQSVIADTVITAPARINWLETQQISFYTGTDFYPFIHHINTECSAIPFTTNASSPDNEIATSYKTIWSIDNSPIARQVYITSTNDVTITHGLIQIATSATSNAIPVTNRTPQGLTYGGSGLVMNTQTNYGPAGTPQQFMQPSPKDYEDFAFGLLPNNADGQAFATPDATNGLWPSNAWSTAFGSINTAGQAYYLCLHYALYTETVPDSRG* |
| Ga0114354_100773315 | F000710 | N/A | MASNINISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKSFEGIKFSSTTSAAPATLINAMQLRITLTINNDVVIDDVCAHDLGASTGAGITSGFPNYIPFPRALTGQDTILLRVTNSSGASQILNAVVFYKNEI* |
| Ga0114354_100773316 | F006697 | N/A | MANQVQKVAYVDAKLGVGLPGQQTTRVIYDSVNATAGQTFFEFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQIISNSGTALLSDHLNLNIQVGNQTVIKDFDPSFNATPRGLAFDRLHSGFNSATNLELRLLTDIVIPPQVNFKATLQFANTGILVNEDVTIVLKGYGRIFSAGNSF* |
| Ga0114354_100773317 | F002259 | AGG | MGMSAQQKMLHVADRLGLTTLKDMQGTTRMVYDSITTAASNFTFFKGASQRAFPLTNIGANGNQFQVDEALLVEKIGFFIPSAADGIAYASAAANIISVKFDLVIGNKTVLKDVSCEFGGEQAFYNDGASASSVIDLEGVGILIPPQVEYYVVAKPFNGDTRTAASVRLGCYLFGTGALLNFNTTI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |