| Basic Information | |
|---|---|
| Taxon OID | 3300008116 Open in IMG/M |
| Scaffold ID | Ga0114350_1021350 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2685 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006844 | Metagenome / Metatranscriptome | 363 | Y |
| F007112 | Metagenome | 357 | Y |
| F044490 | Metagenome | 154 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114350_10213504 | F044490 | N/A | MMRIRVLRASKEEKVAVAIGRLLSDFHLDLEKVGFYVAKSLPHTIYRRALEVLQSAEFQENEVEQNRLGYRSDRLY* |
| Ga0114350_10213506 | F006844 | AGGAG | MAKWEIEVIFEPTGDYMNFVYETDTEDEDIIFNEVANQLSIVPNLVEKNEEE* |
| Ga0114350_10213507 | F007112 | N/A | WSSNANKENNLMAGYNDDPTDVLGFSEDKEKFQEALVSVGKFKSHAMNRAIKEFKPDKFISDMVDYALEGGRSEYNGDTMMSAYTMKETATMLMGGWTSDSGLYDLAENIAEATYLKERLDKPEQAVRQYLVPVDFHF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |