Scaffold Ga0114347_1019218

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114347_1019218

Scaffold Ga0114347_1019218

Overview

Basic Information
Taxon OID	3300008114 Open in IMG/M
Scaffold ID	Ga0114347_1019218 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3253
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_101921810	F001807	GGAG	MSVLAIEHTTIEDGYVTVTAVVENMRLLYRATYRDPEEWAPALCTASFELDEDEQIPTDEDGFCFYLHKLDLDWQLVDVSD
Ga0114347_10192188	F001165	N/A	MPDNLRIPDSTDMQRLAAMRLVAQMKESADKNGIGFIGGFIAPDGQKFVMSNLEDDDMQRMLPEELQ*
Ga0114347_10192189	F001120	GGAGG	MSEKSPINFDKTIAGFNITEHGVKSYTKSFQLGPFQLTLNGRESGIRGSISIPGTGISKRNIKLF*

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