NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1003222

Scaffold Ga0114347_1003222


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1003222 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16406
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (56.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002037Metagenome / Metatranscriptome600Y
F003522Metagenome481Y
F009394Metagenome / Metatranscriptome318Y
F011921Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_100322211F002037N/AMMSKIYWIFIVVMAALAIWGTEKVLAQTTTILAPDGSVTVCQVHPNGTVVCV*
Ga0114347_100322221F011921N/AMENYMLEHIAKILKQLNDELKLDNDKWERANVTTTVLRPSNDATTPTRITTTGEKDEL*
Ga0114347_100322236F003522N/AVKEKILAYLTEPRTINDIAEHIQSNYPITKNILVEMRDANVIHAYKDNQNRLMHYYVPQPHPLQTSHNADDAKHNLQHKTTQETYGESVAYTLTRYD*
Ga0114347_10032225F009394AGGAMVNNDTDSRLSTHEEVCAIRYEQINARLKRLEQILLGTAGFVIVFLLTQLSK*
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