NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1032274

Scaffold Ga0114340_1032274


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1032274 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2745
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y
F007644Metagenome / Metatranscriptome347Y
F009685Metagenome / Metatranscriptome314Y
F069753Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_10322742F069753AGGCGGMQSKEHKVGELLANSLEDHFFNPAALGRYLAEQPIYTLDRIVEVVAWVIEKQARRYEREYNNGGTVSEGLAVSYKLDQVIDKIKLKNNFDHIKLP*
Ga0114340_10322745F001019AGGAGGMSNYEPSLEILEVNYGCSPGGVDMFEVYDKSDIPMDVPIYETESLTKAVQFCYNLGKDFTVRTLAEWEERELMNA*
Ga0114340_10322746F009685AGGAGGMKTTDTYVDNVLAEAQRLLWGGSETENIEAHNLIAKLIRDRMSEQEGTNE*
Ga0114340_10322747F001781GGAGMKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTINNILDDETYKAKVTQDQMWDNLCEAVSAGHGFSLEYGAEQHQDDVLEWMTNRDYIVDTMWEEDEEDEDEDN*
Ga0114340_10322748F000263AGGMIPHNELPAHLQRMVDAGVTGLDIMHGELKNLMLIAEQELAEAQAIEDETEEAMDSMDRTRCEGALDTLVSLYQLTYDLSFAIGARDEA*
Ga0114340_10322749F007644N/AISLNQDLESHDNPETKIHLDGQIVATRHLLSVATDIMNSTNERVYQ*
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