| Basic Information | |
|---|---|
| Taxon OID | 3300008107 Open in IMG/M |
| Scaffold ID | Ga0114340_1005223 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6935 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001182 | Metagenome | 755 | Y |
| F003407 | Metagenome / Metatranscriptome | 488 | Y |
| F060848 | Metagenome | 132 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114340_10052235 | F060848 | GGAG | MLLPIVNTEKKMPVKMLEALGLYETRCVVTGVKSVTEESVKAFLTERYGEKFASAFDPKFLFSSQGS* |
| Ga0114340_10052237 | F003407 | GGAG | LTNELPPAIDACLDLVKDLIHPEVFGHAMPDEVKARAFVVKTMLERLKARMETSTWPEA* |
| Ga0114340_10052238 | F001182 | GAG | MNYQATPPCPKDLFQFECCIEDVELVCFLEYSPEEKGSVDSLGSPYEPDIEECMTLNNAYIAGTDVDIAHMILQGFVDHIEESALEKFLDK* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |