Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1000226 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	56654
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (76.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

56654

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (76.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001229	Metagenome / Metatranscriptome	741	Y
F005054	Metagenome / Metatranscriptome	413	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100022612	F001106	N/A	MDVPRKGEYMSFETLKVAELKKIAEDFAVEIDGLKNKADIIAALSDEGVTWSVYQKTIEDIEKSVEEDEYEVIPRLDPKKELSEDRVLVRMIRENFRYDIMGYTFTKEHPFVAMSEDDAQEIFDKEEGFRLATPKEVQEYYG*
Ga0114340_100022613	F005054	N/A	MAEILVNSQSPISHQVFWNGDVGTPNANPIAHLYDITEDPAVSPAINPTVELETLTSVADENNPGVYTVYIPYQYTNRNRTLKLKWEYYMGQKYVSKEDQVFVVTPYVDFNHVQDLGFSIDASDPGYKSYKDLIKAERYARKQIEQYTGQKFFLYDDVYVVHGYDSDILPLPAKLNDLHELYAGDLLLIDTIQNVNNLGYEVIITETGYGIRLNRENILDNTVYVANGMVPPTIHDSYGLFKSNVPYRVQGRFGWSNVPDDVELAGIELMKDYFSKDQVWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLADYVMVSKAEII*
Ga0114340_100022614	F001229	GAG	MNQLIESVLSMKLDLYRQTEVQDSNTGALKREWNYYKTIDCHAKGVISNSATTRSSDKQIFSNKYSNDQIIQVRTLHRITMREKITNIRDVDNNVIWAEINFPTETPTVFEVIGITPMTDPFGNVIGYNSSLKRSENQQIGI*
Ga0114340_100022616	F000258	GGAG	MTVDYKADVMYDIRKHLWDNLQSSEIIDPYDYYSDNLDEVLVPIIPVQQMAEMNQFLSGKTHIVYDKVGISYEDNWAICCEQIMFNIYSTDFAQIVEIRNLMMDLYRRMDESARDVNWFDQISDKFKFYSIFIADISATTPSEELAGFLSTEVVLEVKYSREANTEGRFI*
Ga0114340_100022654	F000369	N/A	MEIELADHYDRMNKVVEELLKGNNPTAIAAITGFKRAEVIEYIDQWKEVVRNDSAARDRAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAELATQLAETERKQDILVKILKEVTAVCPKCKLDVAKRLSQITGIVEPVVLNEEKNDVL*
Ga0114340_100022657	F000376	AGGA	MSIYQDKAKECKCCSKHVPLPTILKEYNGITLCPTTFANVVEYKRIWATIGSRPNGSVRKHFSDYVQQIVETTIDKTEDNNIQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1000226

Overview

Ecosystem & Geography

Associated Families

Sequences