| Basic Information | |
|---|---|
| Taxon OID | 3300008107 Open in IMG/M |
| Scaffold ID | Ga0114340_1000082 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 68856 |
| Total Scaffold Genes | 98 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (14.29%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015602 | Metagenome / Metatranscriptome | 253 | Y |
| F030766 | Metagenome / Metatranscriptome | 184 | Y |
| F031491 | Metagenome / Metatranscriptome | 182 | Y |
| F041189 | Metagenome / Metatranscriptome | 160 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114340_100008254 | F015602 | N/A | MNLHFTGKYIKRNGRLEFSTLAASKQFEMFVSYIPDGQIVEVFYEQQHDDGTLPQLAKLHVIIKQLAMHTGETVENMKLLVKDKAGLCIAREVSGKEYFLAKSFAECSKDELSLAIQAAMEIGQDINFPVW* |
| Ga0114340_100008275 | F030766 | N/A | MAKKFYAQKDALGWPIPGTMMAGAKVPANLLEIPAENVAAGAGEVEVSHPEKLRYFVRKDKKGNIIPNSLIISFKKPIGDTFEFKLVKAS* |
| Ga0114340_100008280 | F031491 | N/A | MFTTSQTRTERQFLSYEEYKTLPKDQQNHYKAEILEDMRDYHSNLLENLEASRNDFQMKMAFYDKQARNVVGIFPNEFRKEGGFYFELITREFKPADPNRTVYRIPYNPSFEEEYEMNEKGSYLVPLEELRIADPHAVAISGRSAILETQKKQTASKSVVSYKAPEPMEDAPYSEMTIRDFYAIHTGKPVSTKIWLNELIKSTK* |
| Ga0114340_100008282 | F041189 | N/A | MFSTNGQEVKQTGGTSKSFQPGVVYAHILRGQLRTSNKGDKKTLELFISGPALDNFEGWPIDKDNPTGPKYSGQTARVGATMWTDEFSNVNVSRNEIMYKLSIIATELGLKHELDSINATTIEDWVAQVIDLVKGNNLYWFLKGTEEEYNGKTIVKLSLPKYKFVSIEEDKLEKFDKNNKYHYKALNTKPVSSFEPATDEFQM* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |