NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105711_1164489

Scaffold Ga0105711_1164489


Overview

Basic Information
Taxon OID3300007777 Open in IMG/M
Scaffold IDGa0105711_1164489 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS918_NRZ_DNA CLC_assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1592
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameNorth Rift Zone, Axial Seamount, northeast Pacific Ocean
CoordinatesLat. (o)46.0747Long. (o)-129.995Alt. (m)Depth (m)1716
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022673Metagenome213Y
F031898Metagenome181Y
F072444Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0105711_11644893F072444N/AMPERENNAFWEIAEIIDREMSILRKMRPVGPKEKALEKKMMEDKEKEHEKRTNSQP*
Ga0105711_11644894F022673N/AMKKEQIVSPRVEIAEKIHEELLVSLELERKLLKKELTLQETMTERVTVRKDLIKCERKIKDLTEQLQKENNRSKETKWNHQP*
Ga0105711_11644895F031898AGGAGMESSALKDFQEEIEEMNDDDARLKIIKDWEKYRERKDLGIRNYPESCMERMLSDDQVHGI
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