Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10997 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10997 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	65911
Total Scaffold Genes	98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	81 (82.65%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

65911

Total Scaffold Genes

98 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

81 (82.65%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008879	Metagenome / Metatranscriptome	326	Y
F009260	Metagenome / Metatranscriptome	320	Y
F014358	Metagenome	263	Y
F021992	Metagenome / Metatranscriptome	216	Y
F057982	Metagenome	135	N
F069826	Metagenome / Metatranscriptome	123	Y
F071969	Metagenome / Metatranscriptome	121	Y
F088778	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1099733	F069826	GGA	MMEEIKKRKGRGPSKKPTLFNTSLRLSREVMDYFNTHHPYSKQAKIREILTEYVNSQQQGANNGN*
Ga0104988_1099743	F057982	GGAGG	MSTYKYRITYSNGNYVDWDSMQKELAWAYKWGIFLYAVRLNIGAWRAGHKSFTYWLYVMGRKPKITREMKND*
Ga0104988_1099763	F014358	GGAGG	MLDFDWKICVDCGDDVPASRYQAFCLFCERDREHAASEARSSWCIVQEYGKGPYQLVTPTQAPTTLKQTNQKELRT*
Ga0104988_109977	F071969	AGGAG	MKEALISTIEPRETGYRVAQVVAEGETFPVAPALFWTPCADDVVADQFWYDPSDQQIKPIPQPEPTV*
Ga0104988_1099778	F021992	AGGAG	MAMQYDVKSTHLNASGSIFSGRARIKGFSICATASTAGTLQLKDGGSGGTVMVEIDIPSNSNPNSFYVLVPGEGVLCSTSIYATMTNIASVTVFYG*
Ga0104988_109979	F088778	GAGG	MGVLGWVAAVVLVALMLPLLAFLYLDVLETKHEAKAQMEKVEKLRREIERKNRDKEPTNFDDNPVFDRVRRPLSLPLPKSKELGEP*
Ga0104988_1099790	F009260	GAGG	MATPKKAPSVVVGEADNKKYLKDMNVSVANTRSGEYKPTKTDGIKIRGTGAATKGVTARGPMA*
Ga0104988_1099794	F008879	AGG	MATFKKGDVVRLTGVVPLGPVIGMRMDDDGNVSYLIEWTDIEGHVQQRWFAENELAAV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10997

Overview

Ecosystem & Geography

Associated Families

Sequences