NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0104988_10996

Scaffold Ga0104988_10996


Overview

Basic Information
Taxon OID3300007735 Open in IMG/M
Scaffold IDGa0104988_10996 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)62893
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (85.39%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004788Metagenome / Metatranscriptome423Y
F005476Metagenome / Metatranscriptome399Y
F023296Metagenome / Metatranscriptome210Y
F036199Metagenome170Y
F044911Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0104988_1099621F036199AGGAGMTIEAINYKVIWEWINTVWSKSFVSIGCLLIGLGVGGVMAESRIVSDCKFANSFRVDIQAFSCQRKL*
Ga0104988_1099624F044911GAGVDDEQLHLQAATYATNRKNAYVEGMKSGEVDHMSEEALNGKWLAHYEGYKEGYWVATGDDRYTTDPAKLKEKNT*
Ga0104988_1099643F005476N/AMVESYLQEALTKGCEDIEWSAGYNIHHVQAFLTTGQWLLLVAADENGAIHGAAAVSFANYPLHRVAFITLIGGKLISNRETFAQLKSILKQRGATKIQGYGRESIVRLWKRYGFEPRTTLVEVQL*
Ga0104988_1099668F023296N/AMAKYSMKVKGKEVGSGDVYAAPHTMTGKDTNVATYSGYKTGAAVMTEMNMSTGGISKGNYAPVNPYGVGEMRGYGAATKGRKISGKMG*
Ga0104988_1099688F004788AGGMDALELLVQQADEKVSQLKDHLAAGRVTSFDEYKSICGEIRGLLIARGYTLDLKKNLEDSDD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.