| Basic Information | |
|---|---|
| Taxon OID | 3300007735 Open in IMG/M |
| Scaffold ID | Ga0104988_10883 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35828 |
| Total Scaffold Genes | 52 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (76.92%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001515 | Metagenome / Metatranscriptome | 679 | Y |
| F034856 | Metagenome / Metatranscriptome | 173 | Y |
| F045716 | Metagenome / Metatranscriptome | 152 | N |
| F047017 | Metagenome | 150 | Y |
| F057144 | Metagenome / Metatranscriptome | 136 | N |
| F057318 | Metagenome / Metatranscriptome | 136 | Y |
| F067678 | Metagenome / Metatranscriptome | 125 | N |
| F079990 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0104988_1088310 | F034856 | N/A | LIDCRAGAILPYGESIRRTMANYYFTPPTIDETPAGGPPLFDRYKLNRGISVLRTNGVYSSFRYPSQTQILAAEEFYMGGTKNLIDQTTRDALVAQGYSAYIVPA* |
| Ga0104988_1088312 | F067678 | AGAAGG | MATNYYDDDEDNDTTTDVVGQLRKVNRTLEKRAKELEQELAGLKSQTRQRTVKDVLQAKGLNPKIAALIPQDIEPTDEALGKWVEDFGDVFGIQTPTEEKPVEKSPEIKAQARINNMVATGTAPDIDEDAFAKIANAKSKEDLDILLGLN* |
| Ga0104988_1088314 | F047017 | AGGAG | MVDERDKIRQRLGLSPLDAAPGFPANPFVNSTPASTTKPTTANPAIATWIVNLLKNEPQLKAIYDAVRNPATGEFIYSADAIADMITSSDWYLSKGPTVAGNIAGRQRYGEKWYQDKVNQYKVTVSGIANGMGINASDPTVATYLSSLAEASFLNGWDSDYIENTIISNADVVSKASGGLYQSKIDDIRSYGKLMGVDVSQTTANGYLNRLIGTVTPQGLRVKTTAEAIKKEIADQQALLYPFFSDDFAAGRTLWDVTSLQRKKWADLLEVDEDSLDWNDPLWKDGKIFTMVDEKTGKVVQRPAWDAEKLIKADERWQYTENGTRTYEGLGAAMLRRMQFVR* |
| Ga0104988_1088317 | F057318 | GGAGG | MAKKASENFEVSATGGAGTSGQPARYAAGIDNAQDFYDMQTSAPMAGQNPAVARVPSPSGNRGFRTGGQTPFVPLTAPTQRIDEDVRMGATEGLDSMYATDQTANGEDADRMRQALPYLATLAELPTTSNAYRNYVRYLKSIL* |
| Ga0104988_1088318 | F079990 | GGAGG | MKKSLSGGKKPKNQGSAGKAPTQKPMMAKKASSKGGKTYFSGNPSGTRGSRSK* |
| Ga0104988_1088337 | F001515 | GAG | LAKNSSFDLDFGYGRKGEQLVEELLTEGRTVEVKRDRKWYKTNNLYIETSCYFKKTEAWADSGLSVTEASYWAFVLQVSVIMVPTPVLRYAVQNFGREITCEIPPNLSKGYLITVDDLMTATRKYNEEPVDG* |
| Ga0104988_1088344 | F045716 | AGGAG | MSENTPIQINFKTKKDGMLINLRAADGAELDLLMTQISERLAALVDLEKTVEGMAVVKNAFPNAQVVGSAPTATPSAGTPECACGGGAMRFVPAGIAKSTGRPYKAFYACPKPQGQACQNKVPA* |
| Ga0104988_108838 | F057144 | AGAAGG | MTAIVGVQGKGWAVLAADSMTTYTDKPYVAKGCEKIVKVGEYLVAVAGDAIAGDILNNLWQPPKVIKTQDSDRFMMIRVLPSIKQTLTEAGYDPAPKNKNDDDAGWDALICFNGKIYQVSDDYGYMRDDKGLYGIGAGGGIALGALSALDAERRTHTKAASAAKKAINIAIQYNIWCGGPVNIKTQFTR* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |