NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104988_10669

Scaffold Ga0104988_10669


Overview

Basic Information
Taxon OID3300007735 Open in IMG/M
Scaffold IDGa0104988_10669 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)21625
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (30.61%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F015581Metagenome / Metatranscriptome253Y
F024548Metagenome / Metatranscriptome205Y
F041194Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0104988_1066912F041194N/AMPAKLKRDKIYMQCHCCDDRRIIDLREYLLEDKHHDYLYSMFNDNFVYNEAKA*
Ga0104988_1066915F015581N/AMNELTKPNAFVFKAFIDNEYKLCVCPRIDNKWSEADIVYIQDYDGAFDDVLHEKYFSVLFVGYEKTNDTNGKFTLKNVNAQYIKSDTAIASDMYANNSFFSTIEKGYQHFYEQSITSEREGIVSQTSEQENL*
Ga0104988_1066918F024548N/AMKSADNVVELTDSDIKKYTKLKEGIKIEPNDCVHIYDNFYAKLSKGSIVCKEVVSKHNTILRKK*
Ga0104988_106696F000962GGAMNIHVPEEIKNKYPHMEFRGKQRTLNDRTVMEAYNHATNQNFFYSFEEDFFWFPSQIPDYKLPKVS*
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