NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104988_10474

Scaffold Ga0104988_10474


Overview

Basic Information
Taxon OID3300007735 Open in IMG/M
Scaffold IDGa0104988_10474 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)15866
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (75.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002934Metagenome / Metatranscriptome519Y
F004639Metagenome / Metatranscriptome429Y
F009401Metagenome / Metatranscriptome318Y
F012870Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0104988_1047414F002934AGGCGGMNMKHPAIISIGAFLAVWGTTSNFSLDYRSILGAVVAGVFGYATPKK*
Ga0104988_1047422F009401AGGAGMAKLKITRADGQVQEYEITPLLEYSFEQYAKKGFHKALIEDSKQSDIYWLCWDAIRRSGETVKPFGEDFIATLRSVEVLESDPLG*
Ga0104988_1047424F012870GGAGMTDLAQWEKENAAFLTKIGQVASKPEPKQKKDEE*
Ga0104988_104745F004639AGCAGGMGHIQFLNQDGEWESFPTDEQEANLRENAKTLEELGFQLICQGCNKFPNATQIRERWLKHEWTCSACGVVNSAGKA*
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