| Basic Information | |
|---|---|
| Taxon OID | 3300007735 Open in IMG/M |
| Scaffold ID | Ga0104988_10356 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13934 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019968 | Metagenome / Metatranscriptome | 226 | Y |
| F022646 | Metagenome | 213 | N |
| F037125 | Metagenome | 168 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0104988_1035613 | F037125 | N/A | MIDASMRGSHDLERIIYELRKKIDILNEEIQAKEIYIKKLENDLDKSVRSDN* |
| Ga0104988_1035624 | F022646 | N/A | VQIRKANIITSVKHQKFVASFPCVVCGNDTQVQACHIRSIPKLGNVGKGIRDCKFLIPMCFTCHSLQHQIGELEFFEKYNINPILISMKLASISPCNKINQAKQEGAYNGKLDYREHIRINKKDSLR* |
| Ga0104988_1035628 | F019968 | GGA | MRNTGVICSMSYYELKLMTAVLSRILLDNEIRGEHTKKRIYSLIGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |