Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1451 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1451 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	15163
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (72.22%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15163

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (72.22%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003112	Metagenome / Metatranscriptome	506	N
F014487	Metagenome / Metatranscriptome	262	Y
F020886	Metagenome / Metatranscriptome	221	N
F068581	Metagenome	124	Y
F074558	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_145110	F000635	GAG	MTLTEIAQYAGEKVGKTDADTLTFLQKSASLAYRRVWDFAPWRETVTNSTYSVGTNRTITLGTNVETPLSVAYNDTEVDPIDLATIVSQDPGLLTDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCITRTNYIVDFPPSTDALGDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA*
Ga0104986_145112	F002149	GAGG	MTAVEYIEKSNVPEAMWPNLADWFGWFEKQGMVGIVEDKDGIAGVALARCVKDGQEPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV*
Ga0104986_145115	F074558	AGGA	MALDPNDPLIPMPWQMDSIRAYRASKAMQAEEDALKMQRLRQEVEKGYDETPRGKASRAADLTAFLEQEKQKESGIPIGEEMGARMTAKGGPSILEATKMQGELDVESKMRQARIASIENSLAGGKSLLPTADINLGGVQRTVLAPEVGRTTADINQQIFQAQVPQLAKAYMAQGYDSDTAVKMAGSDVTKNLFKAQSSGKVVLTSNDGMSTISYTNEQAQKMWKDPSTPKFIKTQLNNFFGESEEPAAANWIKSRLGR*
Ga0104986_14515	F014487	N/A	MPIIFIALLLCSCSPKPANNNVLPRYSDMGAAEDAGNVK*
Ga0104986_14516	F003112	N/A	MKRIAMWLTNLSLRFLMTGQEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEVVDAVVHLAVSLRYLEGKGRES*
Ga0104986_14517	F020886	GGAGG	VSLDEISDLKDRIATQSERLARMEERQMTLISMIERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLVCSMAWDVLKNRFNG*
Ga0104986_14519	F068581	GGAGG	MKLDLSVNEINTILACLGRAPYEAVFELVEKIRSQAKEQSEAK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1451

Overview

Ecosystem & Geography

Associated Families

Sequences