Scaffold Ga0102859

Basic Information
Taxon OID	3300007708 Open in IMG/M
Scaffold ID	Ga0102859_1014560 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007708 Open in IMG/M

Scaffold ID

Ga0102859_1014560 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1996
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

1996

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2342	Long. (^o)	-123.9167	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2342

Long. (^o)

-123.9167

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y
F003603	Metagenome / Metatranscriptome	477	Y
F009685	Metagenome / Metatranscriptome	314	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102859_10145602	F000263	AGG	MNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLMAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGARDEA*
Ga0102859_10145603	F001781	GGAG	MKPEDKDKLNECLAILDKTDLGLSLVWLWTWSTINNILEDETYKANVTKDDMWGHLCEAVEAGMGFSLEYGAEQHHEDVQDWMLSRDYIVDTMFEEEEEEDADE*
Ga0102859_10145604	F009685	AGGAGG	MSDEYLNERLNTAQKLLWGGSETENIAAHNIISKLIQDRMVEDEGQYDSL*
Ga0102859_10145605	F001019	GAGG	MTHYEPSLEILEVEYSCSPGGIDLFEVYDKTDIPLSVPIYETESLTNAVLFCYNLGKDFTVRTLAEWNERELSYASV*
Ga0102859_10145606	F034924	N/A	VFGTKYINYYTIVSAADEYQAAEIANLRPSSDWDAIATDDVIEATDVFLDEDNEIDLQLNI*
Ga0102859_10145608	F003603	AGGCGG	MKTKEEQIGELLSNSVEDHFFNPAALGRYLAEQPTYTLDRVMEVVAWVIEKQARRYDREVETGGMVSEGLAIAHKLDKVIDKIKISNDFKNINLPITPKERAEFVKSLPQEQEKSYRYSWLHETNNGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102859_1014560

Overview

Ecosystem & Geography

Associated Families

Sequences