NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102859_1003203

Scaffold Ga0102859_1003203


Overview

Basic Information
Taxon OID3300007708 Open in IMG/M
Scaffold IDGa0102859_1003203 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1371B-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3812
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2342Long. (o)-123.9167Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015997Metagenome / Metatranscriptome250N
F101141Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0102859_10032031F101141GGAMMEKPKKERRFLKILGRVGEILIQEVLLKVGSNLINRIGGKKTLPSILILFLSISLFAQYPNTGNKQRLGFQTTADGLVWRGSISDTASIQPVSNQNAWVILDTVNLKIYSFDFSSNVWGLVGGGSAAFTQPVDSLFFKTSVPPNNVDTAKMRWDNELGT
Ga0102859_10032032F015997N/AMSQLIQPSEVIAGGVARPTPADIRLDKSLISPHIQDAEFRWIVPAIGLTLYDSMVADKGSSTAFTSTSYQDIWDKQLKSFCANAVLYEAAPYMVMQLGSNGLYTLDNEYGQNVGVDGLKFYQDTLLQRLEVKKKRIKDLLCNYATPLTAFIPSAIGCPEASCDEDEEINDIYNTLGIVL*
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