Scaffold Ga0102906_1017227

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102906_1017227

Scaffold Ga0102906_1017227

Overview

Basic Information
Taxon OID	3300007637 Open in IMG/M
Scaffold ID	Ga0102906_1017227 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2234
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2022	Long. (^o)	-123.941	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025396	Metagenome / Metatranscriptome	202	N
F088281	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102906_10172271	F088281	AGGAGG	MTKEKQSKRHQATEIIQLFREGRSDEALELFEKYEFRKEFIGFVMKMGINYEDASDMVQKFTIDKLYMQSNSIKNIEFARTWMYSVLTNMVNDQGRILKKNREVPLDEERDQSQLPKIMNEKSQTRSGC
Ga0102906_10172273	F025396	GGA	MERDGKKFNTGEIPLRIQNILFKFGEKKKIGIAEYLRTFDRLSLQKIAKRMGEGTITEIEYHLDCYLIHSENKKVIITSGQIT*

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