NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102895_1086819

Scaffold Ga0102895_1086819


Overview

Basic Information
Taxon OID3300007629 Open in IMG/M
Scaffold IDGa0102895_1086819 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1554B-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)806
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2871Long. (o)-123.9424Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058813Metagenome134N
F065732Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0102895_10868191F065732N/AMEALVMNDDLSMDERIAWARRSGLTDERIAFLLACPKYTRTGRNDKPAYIKADNPNHHLQKLGDCWWLRIRRRKTNIVHNLGKDLDTARRHRDEMLAAYDKGQPIPHL
Ga0102895_10868192F058813N/AWSTRPSRKVNFADYLKDAGNDFLMSLNLEGNFHDDRFKTLHRDFLVAGGRLARSLDVDIFAKNLANFCPIQMGPDEVAPETVVCSDLRYANEVAVCQGVLHDLGWKVRTIYVATAGVGPANQEEMDSILEIREKHAFDLELTFAPNSRNTIMQEGRYIAKTWRL*
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