NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102948_1011793

Scaffold Ga0102948_1011793


Overview

Basic Information
Taxon OID3300007623 Open in IMG/M
Scaffold IDGa0102948_1011793 Open in IMG/M
Source Dataset NameWater microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3045
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4962Long. (o)-122.1329Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025289Metagenome / Metatranscriptome202Y
F041784Metagenome / Metatranscriptome159Y
F044516Metagenome / Metatranscriptome154Y
F095522Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0102948_10117931F095522AGGAGMDINLVEATPPEKVFTERSGSKYDKVINHAIDNKGTWFQVASVPVENRDSMYSTASAIRKGRLGNIPESENINITCRRVEDKVVMFIKAV*
Ga0102948_10117932F025289N/AMWYISKRIEKGKQMNICEERQVSRWSMKQEIIDDLENYDEVTDDNIREICDSLVPVYNSELIDLASHYSGEEYWELWLNNELGGENPLDILRGNVFALYYQIGCEVLEEMKEEK*
Ga0102948_10117935F044516GAGGMCRDTGYYEPRDDVAVKVVEEMVEKKNLSLMVYYLKMAYQEDQHTYMNDLYWVLQNKFDDVDLEAVKQHVEELLLIDDSDRELFEEE*
Ga0102948_10117937F041784N/AMEKYMYTKTIGYCGVDSGQLFITDPCYIKHQEQGNGQWNMEWVDTDNGRSYKTLPDPTLDGETKNFYSKVCEANGKGNAGVEIELGVAFGTTHGDGNYAVQGIFDDDDVMVGIFMDLDGRVKGEFEYEQEEGW*
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