NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102861_1024263

Scaffold Ga0102861_1024263


Overview

Basic Information
Taxon OID3300007544 Open in IMG/M
Scaffold IDGa0102861_1024263 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1449B-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1518
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2327Long. (o)-123.9168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F006697Metagenome / Metatranscriptome366Y
F031077Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0102861_10242631F031077N/AVGVGVKFDFVIGNKTVIKDATCELGGEQAFFNDGAAASGVIDLEGVGILIPPQVEYYVIAKCYGSDSRLASSQRLGCYLFGTGALLNFNTTI*
Ga0102861_10242632F006697N/AMANQVQKLSYVDSKLGVSLPGQQTTRVIYDSVNATAGQQFFQFFTNFAGKTEFQSNLTTNKLDSAESMVIKSVQIIMGSALCNLADHLNLNITVGNQVVLKDFDPSFNATNRGVAYDRLHSGFNSNTNLEVRLLTEIVIPPQVNFKAELQTSNPLLALNDDVTIIFKGYGRIFSAGNSF*
Ga0102861_10242633F000710N/AMASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGILLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHELGASVNGGVTTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI*
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