| Basic Information | |
|---|---|
| Taxon OID | 3300007543 Open in IMG/M |
| Scaffold ID | Ga0102853_1000224 Open in IMG/M |
| Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10087 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (68.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003750 | Metagenome / Metatranscriptome | 470 | Y |
| F004476 | Metagenome / Metatranscriptome | 436 | Y |
| F011390 | Metagenome | 291 | Y |
| F011760 | Metagenome | 287 | Y |
| F015209 | Metagenome | 256 | N |
| F057375 | Metagenome | 136 | N |
| F095470 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0102853_100022415 | F011760 | N/A | MVMRVRIQDVGNRSSAIEYVGQGVWFDGKSYIVTRYKSNPSVFYFFVYNDFVPAYNYFDEMNAGIGNEIWQLNPENGNYSGKTFVYSSMLDKMYDPYAVNPVVESPSFLFEIH* |
| Ga0102853_100022417 | F011390 | GAG | MMKIQTTNYGLCSVKKHKYQTNGNLALSLIDEDGCPVTYISTNVFPMGENEFCANYYNMGATLWNDIATSGLFEQTGEKVPSGYCEYPVCKLIVDID* |
| Ga0102853_100022420 | F095470 | GAG | MKKVMWVSDSLEPWNHSHHYEPLIEDLTGFNLTENLCSETVKYMAKRLKDTPYQRRFRSKYSIFENEYVALVEKFNTQADNNGKIEVK* |
| Ga0102853_10002243 | F015209 | N/A | MNSYRRKALSLWSALLAEERWHKFESTNCKPSCKGWNGWAPYCECFENHCTFVPKGEIEDMELVIVAKPIDDVLRNIQVIP* |
| Ga0102853_10002245 | F003750 | GAGG | MTLDMVNRLLYLVVWGGGIVAFWQITKHMPKALYTLLECISVMACSVLLLTPIAMIIEYILGGNIHTTMMFVGCLAGVGLLCGIWMVMVQSSRELQGKKQYKYVVL* |
| Ga0102853_10002246 | F004476 | AGAAG | MLFSKNGFMSVDTTEAFVKQALEFGNKDVVLSVVHSDGVIDIVFSPTMDAIEAEVYHFLNDGTELKYSMPIKTLTNNNISTLHLTSAIYAYLSEAFKVADMFRSTTRQSTDYAN* |
| Ga0102853_10002249 | F057375 | AGG | MEQTVHFVNASDFFDAIELGSAESGEFLEQFTYGDSLTDITLVARTTFLQRLTKFIGECEDIYEKDVVMQSLKEFNFGLLGAIKHVNIEM* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |