NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104999_1035362

Scaffold Ga0104999_1035362


Overview

Basic Information
Taxon OID3300007504 Open in IMG/M
Scaffold IDGa0104999_1035362 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2509
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)267
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006917Metagenome / Metatranscriptome362Y
F062183Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0104999_10353621F006917AGGMIDTDKFVKNLHKEIKRRKERKQRIFNTIYLVGVFIFDFIIDNGEWI*
Ga0104999_10353622F062183N/AMNWLWDEEFEYIVPGGNPITVAWNMDGDDIEITAIYWEDKKRKSHYSHDELWEMDSDLAEEITEYIANEFLESEDFWLTKWGYDF*

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