NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099791_10000742

Scaffold Ga0099791_10000742


Overview

Basic Information
Taxon OID3300007255 Open in IMG/M
Scaffold IDGa0099791_10000742 Open in IMG/M
Source Dataset NameVadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12227
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameEel River Critical Zone Observatory, California, USA
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008142Metagenome / Metatranscriptome338Y
F016892Metagenome / Metatranscriptome244Y
F080579Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0099791_1000074212F080579GAGMSTSRRTGPRAAVRYLALIYLEPGQREALRGYERRVLPVVQRHGGAFERIWSPAPAEPGAPHDPETPDEIHLLRFDSPTGLAAARRDPEMQALAGLRASVVLKAVLVPVADVPLGPYFADPA*
Ga0099791_100007424F008142AGGGGGVKRFVLTLAWVLWAHEMATVGDRLVDRGYTAVDSFETRQQCHAALADYSALKLVRQGKVKVEFTCLPEKTEPRTSRSAIG*
Ga0099791_100007427F016892AGGMKWPSSRSVALVWLLAALSLIGWLIVNLDTAGWIILTLTVGLMAFELTRRRDGAGGSPKRRIPDEPTG*
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