Scaffold Ga0075419_10002017

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075419_10002017

Scaffold Ga0075419_10002017

Overview

Basic Information
Taxon OID	3300006969 Open in IMG/M
Scaffold ID	Ga0075419_10002017 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13166
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8443	Long. (^o)	-83.9607	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015616	Metagenome	253	Y
F018108	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075419_100020171	F018108	N/A	SRDEVREMVARAAAGVDDASQASLPAPIAIAHHICRRWSSGLDSL*
Ga0075419_100020175	F015616	GGCGG	VTSNRAVALLGLAGLLAGGCATTKELTRDVPGTKFVKYTIAGADREQRAGLERGLSQLRAAEYDAAARSLRQAVWDVEQIDKPWLRLEELVEVHEALADAYTGLGKTQWSEEQRALAQALTEYGRRETKAGSPDAVLSKARGAYQTAHFREAVTALSQALVELEGLSPTPARLKALVDARCHLMLAYFALGRADRAGEEVRHLAASDGAIASCNRQAPPPVRTFIRSIETTESRFGKRSAE*

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