NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098051_1068042

Scaffold Ga0098051_1068042


Overview

Basic Information
Taxon OID3300006924 Open in IMG/M
Scaffold IDGa0098051_1068042 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)971
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014804Metagenome260Y
F016596Metagenome / Metatranscriptome246Y
F018080Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0098051_10680422F014804GAGMSDDWIDNILDGEPSGITHTQWLIIEGNIDLTSFTETMKSDILGRINDLTELEAEEIITKIYENRYEKDTRKQWEKMFKDGVFGHRDF*
Ga0098051_10680423F018080N/AMEYLDIEIFNHFLKAYTYIIWNKKNILGEIVEDDMMKMLDEIQLIDFYHIGKTKFKVERSKIEKYIKRDDK*
Ga0098051_10680424F016596N/AMTNKYSLVQIRESRNEFEALLRIYGISNLKLCKILGVNYATSRKFIENPPSLRFIHAKILADFIGLKIQDIVDTIVYDLN*
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