Basic Information | |
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Taxon OID | 3300006893 Open in IMG/M |
Scaffold ID | Ga0073928_10008045 Open in IMG/M |
Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13384 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Banff | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002746 | Metagenome / Metatranscriptome | 533 | Y |
F046736 | Metagenome | 151 | Y |
F059139 | Metagenome | 134 | Y |
F105036 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0073928_1000804517 | F059139 | AGAAG | VVLEQADKLKAEIAEMEEELKAKRRQLQKFEEAKKLFEAV* |
Ga0073928_1000804521 | F002746 | GAGG | MRVRDLGNRPAPDSLRQLFARVVRGHGPAIPVQRRQIPYWQERGWTLKGRTYTGSYRTPYCAFYGQITEHRGGHIDFLLYNPSDEIRRHSHWVCFQHRGNDWYMVHMAKLPRDVSSGVLTIERLITEAYEQQ* |
Ga0073928_100080456 | F046736 | AGGA | MRQNKQQHQHQNMLDHFRRRMGFTLRHVARLLGQQDTSALSDYERGDHMPSLVNALCLGIILRVPVEFLFPALYDRLRNEIREKEERLAKPEQPTLF* |
Ga0073928_100080457 | F105036 | N/A | MTNILDRVARSSSSAQYSQFQPSDQGEYFALRLAQKLDDAAAARHYVELLEHYSEAQLLVAYRRTKAAGSHLECARSFHVELKRLEGRNGNGSPTRRLAAIRIERRAVAVAILEGGHLAAPPQVRQLSSNSDKALGSAAAFISRILQKYPLGTAALETIPCEDEVLRGELSQIISRVLVEQNVGIWEISKLDVLGSFGHPRPRFRKQVRRVISTIWPGVNGGFGSPLVKDALALGLYCQVERLFNL* |
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