| Basic Information | |
|---|---|
| Taxon OID | 3300006893 Open in IMG/M |
| Scaffold ID | Ga0073928_10000034 Open in IMG/M |
| Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 314322 |
| Total Scaffold Genes | 301 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 224 (74.42%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000042 | Metagenome / Metatranscriptome | 3762 | Y |
| F000378 | Metagenome / Metatranscriptome | 1211 | Y |
| F039510 | Metagenome / Metatranscriptome | 163 | Y |
| F078314 | Metagenome / Metatranscriptome | 116 | N |
| F099609 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0073928_10000034130 | F000378 | GGAGG | MEDRAPVSQVSQQTSPHSSRNRHFAGRGAWVLTAYGISGLALFGLLAYFFSDFIAH* |
| Ga0073928_10000034196 | F000042 | AGGA | MTNTKFLVRVNRSGTRAPEYVQRIDRTPIQTTTNRKLALAMGRFTAEDAVKSIQNSRCTPELISVQVSA* |
| Ga0073928_10000034213 | F078314 | AGGAG | MFRTRTLMAFLLVAMVVGLVLTGSGTAWAQNQSDVFWVAYYSGGVTSAGAAAGTDVQIINTGTSGGNLCADVYVFDVHQELKECCHCNITPDGLLTLTMAQLTNNPANGVFSTNGVIKIVSDAGSNCNEVSPVPTPELRSWIVNPQNNGTITESEFEATPLSAQELNDLKVLCSGVPNLSGPGVCARTNPACD* |
| Ga0073928_1000003460 | F039510 | N/A | MDGPSIEKLRDELTRLMREHIENMQKRTFLGISPEDVQLEKERLQRIREVSADFLEALKRLSR* |
| Ga0073928_1000003483 | F099609 | AGGGGG | MRFSSAVTLFVLTAAFVFAKDQDRNKVCDAASASTADHYAGVIVQKFTLRGEWGRNDATVYLPEKEIAEAAVVFSHSSILAQGASTDLLPLALTLAHAGAAVIVPERSLLWPPTDQSTNREGAVVVCAAHWILDHTEVFNNGMPVVNDQNIVVRGGYAYVGPRVCDPAPSSHCQFRIPFHTDDAALSRYYRHSAWVPVGETEGGDSTDRIISDGGLQAARWLQKNLGLAPIIAVVAGVSSSEP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |