NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075481_10340581

Scaffold Ga0075481_10340581


Overview

Basic Information
Taxon OID3300006868 Open in IMG/M
Scaffold IDGa0075481_10340581 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)519
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022190Metagenome / Metatranscriptome215Y
F090297Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0075481_103405811F090297N/ASPWYYAVGWAKHSLQLQITRYNALGLNTNYEEKQLERLVELEQFLKMSWDQWMESLLPSETAKEVQ*
Ga0075481_103405812F022190AGGAGGVSQVQSIEELRFEGDHLVVDAVVDDMVVRYPQTALEPAEWGPALCRGTLYFSDEDLIPATDAELRAMLSERVDDWAPLDTSDSYV*

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