NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063777_1024173

Scaffold Ga0063777_1024173


Overview

Basic Information
Taxon OID3300006861 Open in IMG/M
Scaffold IDGa0063777_1024173 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 3 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011079Metagenome / Metatranscriptome295Y
F026580Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0063777_10241731F011079AGGVKRRDPWHGANALSKAAADPVLMVKTRKKNRRRVLTWFASWWRNHRPKQAEKPHSKSSVRKALDGPATRPKTPLAVENGV
Ga0063777_10241732F026580N/AMRSRSEPGQVVQAGFEPGRIAVTQRVSGCYCASARTGGSGGHAKNGIGQKKDAERRDKMSVRTGKDTTARQAA*

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