NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075433_10025795

Scaffold Ga0075433_10025795


Overview

Basic Information
Taxon OID3300006852 Open in IMG/M
Scaffold IDGa0075433_10025795 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4971
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002914Metagenome / Metatranscriptome521Y
F005039Metagenome / Metatranscriptome414Y
F015167Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0075433_100257952F005039AGGMNLRVLSIIVVLFCCAFPTDIYSEPTQPVSAMGLMHCVQGVCDETEFQTKALFNLAVQKSKVLKLGKSSLETKSAFVTYTNEFFEGATNALKVQFFTQPIMEEARAKLLSGDNHEISRGGYAALVLFLDEDRNQIWQANLTYVVPGTTVARTVAASPEELTKYFSDFHFDHNRLQLKSKGSYTAPDLKEETLTLSWDTDLDLPVFDQIKK*
Ga0075433_100257955F002914AGGAMDHTCQHCGEFIVGNAYRVTSEDQGIPLLDMVVCSLCFMEAKRLHLHAEEINLRSKQASARNRESHRSQIGG*
Ga0075433_100257957F015167GGGGGMEDKSCPVFVDGKECDRPLTLVDLEGKKIARYDLATYECNLRHRTYFLLEPK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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