NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075464_10045896

Scaffold Ga0075464_10045896


Overview

Basic Information
Taxon OID3300006805 Open in IMG/M
Scaffold IDGa0075464_10045896 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2396
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009524Metagenome / Metatranscriptome316Y
F061658Metagenome131Y
F100668Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0075464_100458961F009524AGGAGGVTDLTILDAIADQLASVNPPAGYTLRKVYATPPEGLPATPCAVLFPGGDQITVGNGNRTTVLTVNVVIYLLPIPRMDEKYRDLYTWRAWLRTVFDGAVTISGNAAQVAVTGTTLGTDTYA
Ga0075464_100458962F061658GGAGMQVIIEPAYLDEQTGMLVEIVRDAETGKIIGKNERMPEEAPE*
Ga0075464_100458965F100668N/AWPRNFPKDVYLGVKVVGVFGFPSVPAAVTQAEIIQAGAVWNSRTAPFGVIGSADLGGILRMSRALHPEAALILEPYRKRGGLAR*
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