NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070749_10009622

Scaffold Ga0070749_10009622


Overview

Basic Information
Taxon OID3300006802 Open in IMG/M
Scaffold IDGa0070749_10009622 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6277
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001841Metagenome / Metatranscriptome627Y
F009141Metagenome / Metatranscriptome322Y
F022190Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0070749_100096222F001841GGAMGQFNPPNFFLGLMRVVAWAFWRDPVAKPEPPQPKRPRKPVLGYTVGDIPFELMAVIRVSWYRKGMAYEVEEYKIEESEDAQAQFHYVVGTALKQGADVCVLTQYEPEELGVPT*
Ga0070749_100096224F022190AGGAGGVKVLDIEELRFEGDHLVVDAVVDDAVLVYSQTQLDPPEWGPALCRGTLYFSDEDLIPATDAELRAMLTERVDDWAPVDTSDWYD*
Ga0070749_100096226F009141AGGAMTEASMVPFYRSYLLNGRTVYLDKLSELSDSELNMLNIETLASLEEARRDYAGVENKQSEEGGSVYRRLKVAGYFQAAIKLELDQN*
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