NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066659_10523261

Scaffold Ga0066659_10523261


Overview

Basic Information
Taxon OID3300006797 Open in IMG/M
Scaffold IDGa0066659_10523261 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)954
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084590Metagenome112Y
F101371Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0066659_105232613F084590GGAVAEATVSDTAAVLARVRRFSFGAYLLFIIPVAINSGWPGFVELTCSAVVTMISFLWLEQIVEAVLQPSPRLRAWKVVLRTLVRYALLGAALAVAIIIARFNALSVLLGFSIVVVGIIGEAVYSTVKGFAD*
Ga0066659_105232614F101371GGAMEHESSILYVPVNALWHSVQHRWAWDIPDHVIMAALVLVISAILFPLASRGISRD

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